R42-recommended#
R4.2 with recommended packages
Version |
インストールされているパス |
利用方法 |
|---|---|---|
20220712 |
/usr/local/software/ubuntu-20.04/R/R42-recommended/20220712 |
|
20220712には以下のモジュールが含まれています。
Package |
Version |
|---|---|
abind |
1.4-5 |
admisc |
0.29 |
annotate |
1.74.0 |
AnnotationDbi |
1.58.0 |
ape |
5.6-2 |
arrow |
8.0.0 |
askpass |
1.1 |
assertthat |
0.2.1 |
backports |
1.4.1 |
base64enc |
0.1-3 |
beachmat |
2.12.0 |
beeswarm |
0.4.0 |
BH |
1.78.0-0 |
bigmemory |
4.6.1 |
bigmemory.sri |
0.1.3 |
Biobase |
2.56.0 |
BiocGenerics |
0.42.0 |
BiocIO |
1.6.0 |
BiocManager |
1.30.18 |
BiocNeighbors |
1.14.0 |
BiocParallel |
1.30.3 |
BiocSingular |
1.12.0 |
BiocVersion |
3.15.2 |
Biostrings |
2.64.0 |
bit |
4.0.4 |
bit64 |
4.0.5 |
bitops |
1.0-7 |
blob |
1.2.3 |
bluster |
1.6.0 |
brew |
1.0-7 |
brio |
1.1.3 |
broom |
1.0.0 |
BSgenome |
1.64.0 |
BSgenome.Hsapiens.UCSC.hg19 |
1.4.3 |
bslib |
0.3.1 |
cachem |
1.0.6 |
callr |
3.7.0 |
car |
3.1-0 |
carData |
3.0-5 |
caret |
6.0-92 |
cellranger |
1.1.0 |
checkmate |
2.1.0 |
classInt |
0.4-7 |
cli |
3.3.0 |
clipr |
0.8.0 |
colorspace |
2.0-3 |
colourpicker |
1.1.1 |
combinat |
0.0-8 |
commonmark |
1.8.0 |
conflicted |
1.1.0 |
coro |
1.0.2 |
corrplot |
0.92 |
cowplot |
1.1.1 |
cpp11 |
0.4.2 |
crayon |
1.5.1 |
credentials |
1.3.2 |
crosstalk |
1.2.0 |
curl |
4.3.2 |
data.table |
1.14.2 |
DBI |
1.1.3 |
dbplyr |
2.2.1 |
deconstructSigs |
1.8.0 |
DelayedArray |
0.22.0 |
DelayedMatrixStats |
1.18.0 |
desc |
1.4.1 |
DESeq2 |
1.36.0 |
devtools |
2.4.3 |
DiagrammeR |
1.0.9 |
dials |
1.0.0 |
DiceDesign |
1.9 |
diffobj |
0.3.5 |
digest |
0.6.29 |
DO.db |
2.9 |
DOSE |
3.22.0 |
downloader |
0.4 |
dplyr |
1.0.9 |
dqrng |
0.3.0 |
DT |
0.23 |
dtplyr |
1.2.1 |
e1071 |
1.7-11 |
edgeR |
3.38.1 |
ellipsis |
0.3.2 |
evaluate |
0.15 |
exactRankTests |
0.8-35 |
fansi |
1.0.3 |
farver |
2.1.1 |
fastmap |
1.1.0 |
fastmatch |
1.1-3 |
feather |
0.3.5 |
ff |
4.0.7 |
fgsea |
1.22.0 |
fontawesome |
0.2.2 |
forcats |
0.5.1 |
foreach |
1.5.2 |
formatR |
1.12 |
fs |
1.5.2 |
fst |
0.9.8 |
fstcore |
0.9.12 |
furrr |
0.3.0 |
futile.logger |
1.4.3 |
futile.options |
1.0.1 |
future |
1.26.1 |
future.apply |
1.9.0 |
gap |
1.2.3-6 |
gap.datasets |
0.0.5 |
gargle |
1.2.0 |
gdata |
2.18.0.1 |
genefilter |
1.78.0 |
geneplotter |
1.74.0 |
generics |
0.1.3 |
genetics |
1.3.8.1.3 |
GenomeInfoDb |
1.32.2 |
GenomeInfoDbData |
1.2.8 |
GenomicAlignments |
1.32.0 |
GenomicRanges |
1.48.0 |
gert |
1.6.0 |
ggbeeswarm |
0.6.0 |
ggExtra |
0.10.0 |
ggforce |
0.3.3 |
ggiraph |
0.8.2 |
ggplot2 |
3.3.6 |
ggpubr |
0.4.0 |
ggrepel |
0.9.1 |
ggsci |
2.9 |
ggsignif |
0.6.3 |
ggtext |
0.1.1 |
ggthemes |
4.2.4 |
ggvis |
0.4.7 |
gh |
1.3.0 |
gitcreds |
0.1.1 |
glmmTMB |
1.1.3 |
glmnet |
4.1-4 |
globals |
0.15.1 |
glue |
1.6.2 |
GO.db |
3.15.0 |
googledrive |
2.0.0 |
googlesheets4 |
1.0.0 |
GOSemSim |
2.22.0 |
gower |
1.0.0 |
GPfit |
1.0-8 |
gridExtra |
2.3 |
gridSVG |
1.7-4 |
gridtext |
0.1.4 |
gtable |
0.3.0 |
gtools |
3.9.3 |
h2o |
3.36.1.2 |
hardhat |
1.2.0 |
haven |
2.5.0 |
here |
1.0.1 |
highr |
0.9 |
hms |
1.1.1 |
htmltools |
0.5.2 |
htmlwidgets |
1.5.4 |
httpgd |
1.3.0 |
httpuv |
1.6.5 |
httr |
1.4.3 |
ids |
1.0.1 |
igraph |
1.3.2 |
infer |
1.0.2 |
influenceR |
0.1.0.1 |
infotheo |
1.2.0.1 |
ini |
0.3.1 |
inline |
0.3.19 |
ipred |
0.9-13 |
IRanges |
2.30.0 |
irlba |
2.3.5 |
isoband |
0.2.5 |
iterators |
1.0.14 |
jpeg |
0.1-9 |
jquerylib |
0.1.4 |
jsonlite |
1.8.0 |
KEGGREST |
1.36.2 |
km.ci |
0.5-6 |
KMsurv |
0.1-5 |
knitr |
1.39 |
labeling |
0.4.2 |
lambda.r |
1.2.4 |
later |
1.3.0 |
lava |
1.6.10 |
lazyeval |
0.2.2 |
lgr |
0.4.3 |
lhs |
1.1.5 |
lifecycle |
1.0.1 |
lightgbm |
3.3.2 |
limma |
3.52.2 |
listenv |
0.8.0 |
lme4 |
1.1-30 |
locfit |
1.5-9.6 |
loo |
2.5.1 |
lubridate |
1.8.0 |
magrittr |
2.0.3 |
maptools |
1.1-4 |
markdown |
1.1 |
MatrixGenerics |
1.8.1 |
MatrixModels |
0.5-0 |
matrixStats |
0.62.0 |
maxstat |
0.7-25 |
memoise |
2.0.1 |
memuse |
4.2-1 |
metapod |
1.4.0 |
mime |
0.12 |
minet |
3.54.0 |
miniUI |
0.1.1.1 |
minqa |
1.2.4 |
mlbench |
2.1-3 |
mlr3 |
0.13.3 |
mlr3measures |
0.4.1 |
mlr3misc |
0.10.0 |
modeldata |
1.0.0 |
ModelMetrics |
1.2.2.2 |
modelr |
0.1.8 |
munsell |
0.5.0 |
mvtnorm |
1.1-3 |
nlme |
3.1-158 |
nloptr |
2.0.3 |
numDeriv |
2016.8-1.1 |
openssl |
2.0.2 |
openxlsx |
4.2.5 |
palmerpenguins |
0.1.0 |
paradox |
0.9.0 |
parallelly |
1.32.0 |
parsnip |
1.0.0 |
patchwork |
1.1.1 |
pbkrtest |
0.5.1 |
permute |
0.9-7 |
pheatmap |
1.0.12 |
pillar |
1.7.0 |
pinfsc50 |
1.2.0 |
pkgbuild |
1.3.1 |
pkgconfig |
2.0.3 |
pkgload |
1.3.0 |
plogr |
0.2.0 |
plotly |
4.10.0 |
plotROC |
2.3.0 |
plyr |
1.8.7 |
png |
0.1-7 |
polyclip |
1.10-0 |
polynom |
1.4-1 |
praise |
1.0.0 |
prettyunits |
1.1.1 |
pROC |
1.18.0 |
processx |
3.7.0 |
prodlim |
2019.11.13 |
progress |
1.2.2 |
progressr |
0.10.1 |
promises |
1.2.0.1 |
proxy |
0.4-27 |
PRROC |
1.3.1 |
ps |
1.7.1 |
purrr |
0.3.4 |
qs |
0.25.3 |
quantreg |
5.93 |
qvalue |
2.28.0 |
R6 |
2.5.1 |
RApiSerialize |
0.1.0 |
rappdirs |
0.3.3 |
rCharts |
0.4.5 |
rcmdcheck |
1.4.0 |
RColorBrewer |
1.1-3 |
Rcpp |
1.0.9 |
RcppArmadillo |
0.11.2.0.0 |
RcppEigen |
0.3.3.9.2 |
RcppHNSW |
0.3.0 |
RcppML |
0.3.7 |
RcppParallel |
5.1.5 |
RcppTOML |
0.1.7 |
RCurl |
1.98-1.7 |
readr |
2.1.2 |
readxl |
1.4.0 |
recipes |
1.0.1 |
rematch |
1.0.1 |
rematch2 |
2.1.2 |
remotes |
2.4.2 |
reprex |
2.0.1 |
reshape |
0.8.9 |
reshape2 |
1.4.4 |
restfulr |
0.0.15 |
reticulate |
1.25 |
rhdf5 |
2.40.0 |
rhdf5filters |
1.8.0 |
Rhdf5lib |
1.18.2 |
Rhtslib |
1.28.0 |
rJava |
1.0-6 |
rjson |
0.2.21 |
RJSONIO |
1.3-1.6 |
rlang |
1.0.3 |
rmarkdown |
2.14 |
roxygen2 |
7.2.0 |
rprojroot |
2.0.3 |
rsample |
1.0.0 |
Rsamtools |
2.12.0 |
RSQLite |
2.2.14 |
rstan |
2.21.5 |
rstatix |
0.7.0 |
rstudioapi |
0.13 |
rsvd |
1.0.5 |
rtracklayer |
1.56.1 |
Rtsne |
0.16 |
rversions |
2.1.1 |
rvest |
1.0.2 |
s2 |
1.0.7 |
S4Vectors |
0.34.0 |
sass |
0.4.1 |
ScaledMatrix |
1.4.0 |
scales |
1.2.0 |
scater |
1.24.0 |
scran |
1.24.0 |
scuttle |
1.6.2 |
selectr |
0.4-2 |
sessioninfo |
1.2.2 |
shape |
1.4.6 |
shiny |
1.7.1 |
shinyjs |
2.1.0 |
SingleCellExperiment |
1.18.0 |
sitmo |
2.0.2 |
slider |
0.2.2 |
slidify |
0.5 |
slidifyLibraries |
0.3.1 |
snow |
0.4-4 |
sourcetools |
0.1.7 |
sp |
1.5-0 |
SparseM |
1.81 |
sparseMatrixStats |
1.8.0 |
SQUAREM |
2021.1 |
StanHeaders |
2.21.0-7 |
statmod |
1.4.36 |
stringfish |
0.15.7 |
stringi |
1.7.8 |
stringr |
1.4.0 |
SummarizedExperiment |
1.26.1 |
survival |
3.3-1 |
survminer |
0.4.9 |
survMisc |
0.5.6 |
swirl |
2.4.5 |
sys |
3.4 |
systemfonts |
1.0.4 |
testthat |
3.1.4 |
tibble |
3.1.7 |
tidymodels |
0.2.0 |
tidyr |
1.2.0 |
tidyselect |
1.1.2 |
tidyverse |
1.3.1 |
timeDate |
3043.102 |
tinytex |
0.40 |
TMB |
1.9.0 |
torch |
0.8.0 |
tune |
1.0.0 |
tweenr |
1.0.2 |
tzdb |
0.3.0 |
usethis |
2.1.6 |
utf8 |
1.2.2 |
uuid |
1.1-0 |
vcfR |
1.12.0 |
vctrs |
0.4.1 |
vegan |
2.6-2 |
venn |
1.11 |
vipor |
0.4.5 |
viridis |
0.6.2 |
viridisLite |
0.4.0 |
visNetwork |
2.1.0 |
vroom |
1.5.7 |
waldo |
0.4.0 |
warp |
0.2.0 |
whisker |
0.4 |
withr |
2.5.0 |
wk |
0.6.0 |
workflows |
1.0.0 |
workflowsets |
0.2.1 |
xfun |
0.31 |
xgboost |
1.6.0.1 |
xlsx |
0.6.5 |
xlsxjars |
0.6.1 |
XML |
3.99-0.10 |
xml2 |
1.3.3 |
xopen |
1.0.0 |
xtable |
1.8-4 |
XVector |
0.36.0 |
yaml |
2.3.5 |
yardstick |
1.0.0 |
zip |
2.2.0 |
zlibbioc |
1.42.0 |
zoo |
1.8-10 |
base |
4.2.1 |
boot |
1.3-28 |
class |
7.3-20 |
cluster |
2.1.3 |
codetools |
0.2-18 |
compiler |
4.2.1 |
datasets |
4.2.1 |
foreign |
0.8-82 |
graphics |
4.2.1 |
grDevices |
4.2.1 |
grid |
4.2.1 |
KernSmooth |
2.23-20 |
lattice |
0.20-45 |
MASS |
7.3-57 |
Matrix |
1.4-1 |
methods |
4.2.1 |
mgcv |
1.8-40 |
nlme |
3.1-157 |
nnet |
7.3-17 |
parallel |
4.2.1 |
rpart |
4.1.16 |
spatial |
7.3-15 |
splines |
4.2.1 |
stats |
4.2.1 |
stats4 |
4.2.1 |
survival |
3.3-1 |
tcltk |
4.2.1 |
tools |
4.2.1 |
utils |
4.2.1 |