Publications

List of ToMMo Papers

Papers using Supercomputer

2017

  • Yamaguchi-Kabata Y, Yasuda J, Tanabe O, Suzuki Y, Kawame H, Fuse N, Nagasaki M, Kawai Y, Kojima K, Katsuoka F, Saito S, Danjoh I, Motoike IN, Yamashita R, Koshiba S, Saigusa D, Tamiya G, Kure S, Yaegashi N, Kawaguchi Y, Nagami F, Kuriyama S, Sugawara J, Minegishi N, Hozawa A, Ogishima S, Kiyomoto H, Takai-Igarashi T; ToMMo Study Group, Kinoshita K, Yamamoto M. Evaluation of reported pathogenic variants and their frequencies in a Japanese population based on a whole-genome reference panel of 2049 individuals. J Hum Genet. 2017 Dec 1.
    http://dx.doi.org/10.1038/s10038-017-0347-1
    https://www.ncbi.nlm.nih.gov/pubmed/29192238

2015

  • Yumi Yamaguchi-Kabata, Naoki Nariai, Yosuke Kawai, Yukuto Sato, Kaname Kojima, Minoru Tateno, Fumiki Katsuoka, Jun Yasuda, Masayuki Yamamoto, and Masao Nagasaki, iJGVD: an integrative Japanese genome variation database based on whole-genome sequencing, Human Genome Variation 2, Article number: 15050 doi:10.1038/hgv.2015.50 (26/Nov/2015)
  • Masao Nagasaki, Jun Yasuda, Fumiki Katsuoka, Naoki Nariai, Kaname Kojima, Yosuke Kawai, Yumi Yamaguchi-Kabata, Junji Yokozawa, Inaho Danjoh, Sakae Saito, Yukuto Sato, Takahiro Mimori, Kaoru Tsuda, Rumiko Saito, Xiaoqing Pan, Satoshi Nishikawa, Shin Ito, Yoko Kuroki, Osamu Tanabe, Nobuo Fuse, Shinichi Kuriyama, Hideyasu Kiyomoto, Atsushi Hozawa, Naoko Minegishi, James Douglas Engel, Kengo Kinoshita, Shigeo Kure, Nobuo Yaegashi, ToMMo Japanese Reference Panel Project & Masayuki Yamamoto, Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals, Nature Communications, Volume:6, Article number: 8018 DOI:doi:10.1038/ncomms9018 (21/Aug/2015)
  • Yosuke Kawai, Takahiro Mimori, Kaname Kojima, Naoki Nariai, Inaho Danjoh, Rumiko Saito, Jun Yasuda, Masayuki Yamamoto, and Masao Nagasaki, Japonica array: improved genotype imputation by designing a population-specific SNP array with 1070 Japanese individuals, Journal of Human Genetics 2015; 60: 581–587. (2015)
  • Takahiro Mimori, Naoki Nariai, Kaname Kojima, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata and Masao Nagasaki, Estimating copy numbers of alleles from population-scale high-throughput sequencing data, BMC Bioinformatics, 16(Suppl 1):S4 (2015)
  • Naoki Nariai, Kaname Kojima, Sakae Saito, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Jun Yasuda, Masao Nagasaki, HLA-VBSeq: accurate HLA typing at full resolution from whole-genome sequencing data, BMC Genomics, 16(Suppl 2):S7 (2015)

Past Papers